PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014788.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25532.9 Da    PI: 9.8285
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014788.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-18128182256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Aco014788.1 128 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 182
                  678899***********************************************98 PP
2HD-ZIP_I/II129.41.4e-41128218192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +lk
  Aco014788.1 128 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQREVAELR-ALK 218
                  69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-18103185IPR009057Homeodomain-like
SuperFamilySSF466899.19E-19118185IPR009057Homeodomain-like
PROSITE profilePS5007116.682124184IPR001356Homeobox domain
SMARTSM003894.4E-15126188IPR001356Homeobox domain
CDDcd000861.04E-15128185No hitNo description
PfamPF000469.0E-16128182IPR001356Homeobox domain
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
SMARTSM003409.9E-23184227IPR003106Leucine zipper, homeobox-associated
PfamPF021833.4E-11184218IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSKGFREREE RERSGGGGGG GGGGYGDPLV SLSLLPPSAS PKSLLGFLPP WAPLETRNVD  60
VAIQRFDVNR PPPPPPLLLE ETEEGTAMSP SPNNSAVSAP KPGGSPAGGD GERAGSKGSD  120
EDENGLGRKK LRLSKEQSAF LEESFKEHNT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR  180
TKLKQTEVDC EYLKRCCETL TEENRRLQRE VAELRALKAA AAAHPFVLRR FVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5590461e-78AY559046.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 11 (hox11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110186.11e-167homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-70HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A199UV128e-97A0A199UV12_ANACO; Homeobox-leucine zipper protein HOX11
STRINGXP_008791862.12e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-39homeobox from Arabidopsis thaliana