PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014792.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Nin-like
Protein Properties Length: 97aa    MW: 11065.8 Da    PI: 10.97
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014792.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK61.81.2e-19247651
       RWP-RK  6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                  l++l++y +lp+++AA+ L +c T+LK  CR+ G++RWP+R+i+ 
  Aco014792.1  2 GLSELAEYLHLPMAEAARRLRLCSTALKHVCRRIGMSRWPSRQINA 47
                 5899****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.733170IPR003035RWP-RK domain
PfamPF020426.1E-19247IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MGLSELAEYL HLPMAEAARR LRLCSTALKH VCRRIGMSRW PSRQINAIDR QIARLQKDLV  60
RGTRRGGLLA IKEELERLQE RRARLYEGQN PSEGAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0SCQ37e-25M0SCQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P07860_0011e-25(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.18e-13Nin-like family protein