PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco014831.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 900aa    MW: 100361 Da    PI: 6.0288
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco014831.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  Aco014831.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNENNQ 220
                  99*****************************8544444..48************************************************..788888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco014831.1 221 LLLGIRRA 228
                  9****997 PP
2Auxin_resp121.75.5e-40253336183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k
  Aco014831.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPIRWPNSHWRSVK 336
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-22126227No hitNo description
SMARTSM010191.1E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296127229IPR003340B3 DNA binding domain
PfamPF023623.8E-23127228IPR003340B3 DNA binding domain
PfamPF065078.3E-35253336IPR010525Auxin response factor
SuperFamilySSF542774.58E-8761845No hitNo description
PfamPF023092.4E-8765855IPR033389AUX/IAA domain
PROSITE profilePS5174523.309770854IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 900 aa     Download sequence    Send to blast
MRLSPSGLPE QPPEEEQRCL NSELWHACAG PLVSMPAIGC RVVYFPQGHS EQVAASTNKE  60
IDNQIPNYPT LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLGPEEQKEP YLPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPIRWPNS HWRSVKNGFS IAKSGSIQKL DVCLRSRLEL  360
LLWQEVGWDE STTGERQPRV SLWEIEPLTT FPMYPSPFPL RLKRPWPSGL PSFYGGKEDD  420
FGLTNPLMWL RDAGNPWFQA LNFQGLGSTP WIQPRMENPV LGLQSDMYQT IAAATVQEMR  480
NLDQGKQLSP SMLQFQQPQN VANRSSPLLS SQLPRQTQTE SQQSLFQTIQ DNQVQCLSFS  540
ELQQQQRQLQ QKHFSDQQQI PNVVSTFPQF ISTTQSQHLT VRPVSSFSQS QNILESNDNS  600
LSSSSPLHNI LSSSSLEAQS HLLNLPKTTP LVVSRPWSSK RVALESVVSS GSQCVMPQVE  660
QLDSISTTLA PFPGRECSVD QNANEDPQSH QLFGFNLDSS SLLVQSGLSS IRTNGNEIVS  720
NVIPFAACNY LSSSGNDFQL SQAPTSSSCL DESGLLQLSE NIEHVNPQSG TFVKVYKAGT  780
FGRSLDIAKF SSYDELRGEL GRLFGLRGQL EDPLRSGWQL VFVDREGDIL LVGDDPWQEF  840
VNSVWCIKIL SPQEVQQMGD LSNSNPIKRI PTSSCDDHAG WQETRNLSSG ITSMCSLEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1552038651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103701.10.0auxin response factor 6 isoform X1
RefseqXP_020103703.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A199VD350.0A0A199VD35_ANACO; Auxin response factor
STRINGXP_008777704.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]