PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco014894.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 421aa MW: 45634.9 Da PI: 6.5854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco014894.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	3e-06	311	349	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L Aco014894.1 311 VRKEKMGDRITALQQLVSPF-----GKTDTASVLTEAIEYIKFL 349 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.1	300	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.25E-7	310	353	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.1E-9	310	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-11	310	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0038	311	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MGEDVIYSRM YSGQEGWWNS NIPRTSCFNG SAVMSASISC STEFTDVMGG GFNWAALAAD 60 VPLSQSQSQS QSSSGESPGS AVSNNSLSSF QDTYHAATAQ MTDLAAVSSP AVDWNQKPLL 120 SRESGYHGLF QEGNKSSSLR GDDLQLLNPN PNPNPNPNPN QKNNMCDENI SSSVSLSHNI 180 NQGLPQYQHH YESLLRSLLE PEILEPYYTQ PLPEPSPPKQ QPLQFSTHIN TSSAIRPATT 240 PISKDLRLSS PRNDVVVSHH ALKEINLNRS NRATKSVSEG AGGLSPDIAA QQPALKKPRI 300 ETPSPLPTFK VRKEKMGDRI TALQQLVSPF GKTDTASVLT EAIEYIKFLH DQVGVLTAPY 360 LNNGNQMLHL KSLEKLNGTQ GPKRDLGSRG LCLMPVSSTH AVASEIPFDF WAPTFGGTFN 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MGEDVIYSRM YSGQEGWWNS NIPRTSCFNG SAVMSASISC STEFTDVMGG GFNWAALAAD  60
VPLSQSQSQS QSSSGESPGS AVSNNSLSSF QDTYHAATAQ MTDLAAVSSP AVDWNQKPLL  120
SRESGYHGLF QEGNKSSSLR GDDLQLLNPN PNPNPNPNPN QKNNMCDENI SSSVSLSHNI  180
NQGLPQYQHH YESLLRSLLE PEILEPYYTQ PLPEPSPPKQ QPLQFSTHIN TSSAIRPATT  240
PISKDLRLSS PRNDVVVSHH ALKEINLNRS NRATKSVSEG AGGLSPDIAA QQPALKKPRI  300
ETPSPLPTFK VRKEKMGDRI TALQQLVSPF GKTDTASVLT EAIEYIKFLH DQVGVLTAPY  360
LNNGNQMLHL KSLEKLNGTQ GPKRDLGSRG LCLMPVSSTH AVASEIPFDF WAPTFGGTFN  420
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020102655.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A199VDY2	0.0	A0A199VDY2_ANACO; Transcription factor bHLH112

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco014894.1