PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015086.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 270aa    MW: 30616.4 Da    PI: 10.2696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015086.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.6e-34251651128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev...diykvePwd.Lpk....kvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                  lppGfrFhPtdeel+v+yL+++ ++ +    +   + i+++   +i+ ++  + L++      +aee+e yfF  r+++ a+ g+r+ r t+sgyWka
  Aco015086.1  25 LPPGFRFHPTDEELLVQYLRRSFHSLSpppsF--PRSISKTttlGICPYHSFTyLRAylggGDEAEEEERYFFNLRQSNCAKkGNRSARPTRSGYWKA 120
                  79********************9999876442..333555411166666554414434554323366688****99999875499************* PP

          NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  tgkd+ v+++   +++vg+k+ ++fy g+ ++g++tdW+mhey+l
  Aco015086.1 121 TGKDRLVVAAsrPDRTVGTKRAFAFYLGKPRRGSRTDWFMHEYSL 165
                  *******997666778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-4020204IPR003441NAC domain
PROSITE profilePS5100542.60625203IPR003441NAC domain
PfamPF023651.6E-2126165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLLKSSSTSG MERPQFVRHH GVLRLPPGFR FHPTDEELLV QYLRRSFHSL SPPPSFPRSI  60
SKTTTLGICP YHSFTYLRAY LGGGDEAEEE ERYFFNLRQS NCAKKGNRSA RPTRSGYWKA  120
TGKDRLVVAA SRPDRTVGTK RAFAFYLGKP RRGSRTDWFM HEYSLSADEI RAFTMCHAKN  180
ATLHNISSMF EIKDWVVCRI FKKNRATKFD AGIKRRSTEF ARFVTRQSNN QQPNSPLSSS  240
SSSSSCVTDL SDNGEENSSC NIDSSPRED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-272320815170NO APICAL MERISTEM PROTEIN
1ut4_B3e-272320815170NO APICAL MERISTEM PROTEIN
1ut7_A3e-272320815170NO APICAL MERISTEM PROTEIN
1ut7_B3e-272320815170NO APICAL MERISTEM PROTEIN
4dul_A3e-272320815170NAC domain-containing protein 19
4dul_B3e-272320815170NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6622830.0KM662283.1 Ananas bracteatus clone 45891a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909195.19e-61NAC domain-containing protein 83
TrEMBLA0A199W4V91e-144A0A199W4V9_ANACO; NAC domain-containing protein 83
STRINGXP_008791093.16e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-37NAC domain containing protein 83