PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015162.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 262aa    MW: 27636.5 Da    PI: 4.4416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015162.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-1874122355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++ +g
  Aco015162.1  74 YRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAARAVKG 122
                  9****998.**********843...6**********************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1272122IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2173131IPR016177DNA-binding domain
PROSITE profilePS5103222.8473130IPR001471AP2/ERF domain
SMARTSM003808.6E-3573136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3273131IPR001471AP2/ERF domain
PRINTSPR003679.7E-117485IPR001471AP2/ERF domain
CDDcd000181.90E-1674108No hitNo description
PRINTSPR003679.7E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MALTGQPRSS LSEPETSANS ASSSHSSLSS PSSTSSLARM LQNPATQLFK EEGGGGGAPI  60
RRRVRDSTNK HPAYRGVRMR NWGKWVSEIR EPRKKSRIWL GTFPTAEMAA RAHDAAARAV  120
KGAAAVLNFP ELADSLPRPA TLAPRDVQAA AALAAAMDPA PLDAAPAPAA PAPAPAAEED  180
EELGEIVELP RLGEEEDDDE EGARWCRVGS GEPELAFDDS FDPWAPWTVG ADGEVDDDAA  240
YGFLASDGCV PTTFGRGFLW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18711311273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088012.10.0ethylene-responsive transcription factor ERF036-like
SwissprotQ9LYD32e-53DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A199VHJ91e-113A0A199VHJ9_ANACO; Dehydration-responsive element-binding protein 3
STRINGXP_006476039.11e-55(Citrus sinensis)
STRINGA0A087G6B71e-55(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]