PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015181.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 413aa MW: 47106.6 Da PI: 7.3571

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015181.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.4	1.2e-35	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 lp+G++F+Ptd+el+ e+L++kv+ ++ ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ + + Aco015181.1 46 LPAGVKFDPTDQELI-EHLEAKVKLEEskshplIDEFIPtIEGEdGICYTHPEKLP-GVTKDGLSRHFFHRPSKAYTTGTRKRRKiqadcepqKGETR 141 799**********.99*99986665443333333666646******.555667799**************85666665544788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Aco015181.1 142 WHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188 ********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-38	41	207	IPR003441	NAC domain
PROSITE profile	PS51005	32.974	46	207	IPR003441	NAC domain
Pfam	PF02365	4.8E-16	47	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MNKSQIGSVS GSDLIDAKLE EHRMCESKHC PSCGHKLDRK PDWFGLPAGV KFDPTDQELI 60 EHLEAKVKLE ESKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTKDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ ADCEPQKGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN 180 WVMHQYHLGE HEEEKEGELV VSKVFYQTQP RQCSYSDKNI GASESCSSKE VVRDEISGYS 240 HIDMQQPMKH DSFSLASFRR SFDEGVEQVG MGEVPSKARE EHEEHEHFHR PAQQHHVNQE 300 HRHGRQVAPT AAFHVSRPTS AISAIVSPPL QQQTSVVLDD PYHVSRIILQ QTDKFQQQQQ 360 QQQKLEHRST SGLEEVVMGC TSAGIKGETS IPHSQETWRY SYWSPDHPDH HG*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MNKSQIGSVS GSDLIDAKLE EHRMCESKHC PSCGHKLDRK PDWFGLPAGV KFDPTDQELI  60
EHLEAKVKLE ESKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTKDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ ADCEPQKGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN  180
WVMHQYHLGE HEEEKEGELV VSKVFYQTQP RQCSYSDKNI GASESCSSKE VVRDEISGYS  240
HIDMQQPMKH DSFSLASFRR SFDEGVEQVG MGEVPSKARE EHEEHEHFHR PAQQHHVNQE  300
HRHGRQVAPT AAFHVSRPTS AISAIVSPPL QQQTSVVLDD PYHVSRIILQ QTDKFQQQQQ  360
QQQKLEHRST SGLEEVVMGC TSAGIKGETS IPHSQETWRY SYWSPDHPDH HG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089449.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089450.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089451.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089452.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089453.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089454.1	0.0	uncharacterized protein LOC109711002 isoform X1
Refseq	XP_020089455.1	0.0	uncharacterized protein LOC109711002 isoform X1
Swissprot	Q9M0F8	1e-132	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A199VIC2	0.0	A0A199VIC2_ANACO; NAC domain-containing protein 73
STRING	XP_008798589.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-120	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Aco015181.1

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]