PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015338.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 384aa    MW: 39394.4 Da    PI: 8.9614
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015338.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1352.4e-4299174176
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                  +CqvegC+adls ak y+ rhkvC +hsk+p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Aco015338.1  99 RCQVEGCKADLSGAKAYYCRHKVCGMHSKSPRVIVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 174
                  6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-3494161IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.30897174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-4098177IPR004333Transcription factor, SBP-box
PfamPF031101.3E-32100173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEMGLSSSD SLNGLKFGKK IYFEDGGGGG GGSGNGGGGG GGGGSGNGTA AAASASSTSK  60
APAPAAAAAP PGKKGKGASS AAAAAAAAAA AAAAAQVPRC QVEGCKADLS GAKAYYCRHK  120
VCGMHSKSPR VIVAGIEQRF CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPPSGPLS  180
SRYGRLALSF HEQPSRFRSF LMDFTYPNAL PSTGRDAWPT IRAGDRASNS HWQEGLNPNH  240
NSGTVTVNGA HAYIQGNLFN ASELPQGECL GGVGSESGCA LSLLSTTQPW GNHTTGNATP  300
TITLSSAGFD GSSTAPPMNV GNYETGPWGF RVHGTRSSSH EMPHEVGQFS GELELALQGN  360
GPHLDHGSGR GFEPSGHGMN WSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-301001731184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244SGNGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116195e-42AJ011619.1 Zea mays mRNA for SBP-domain protein 6, partial.
GenBankBT0417775e-42BT041777.2 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds.
GenBankEU9729955e-42EU972995.1 Zea mays clone 391427 squamosa promoter-binding-like protein 9 mRNA, complete cds.
GenBankHQ8586795e-42HQ858679.1 Zea mays clone UT1135 SBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110587.10.0squamosa promoter-binding-like protein 14
SwissprotQ7EXZ27e-93SPL14_ORYSJ; Squamosa promoter-binding-like protein 14
TrEMBLA0A199UEX21e-174A0A199UEX2_ANACO; Squamosa promoter-binding-like protein 14
STRINGXP_008795751.11e-139(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.18e-50squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Miura K, et al.
    OsSPL14 promotes panicle branching and higher grain productivity in rice.
    Nat. Genet., 2010. 42(6): p. 545-9
    [PMID:20495564]
  3. Jiao Y, et al.
    Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice.
    Nat. Genet., 2010. 42(6): p. 541-4
    [PMID:20495565]
  4. Springer N
    Shaping a better rice plant.
    Nat. Genet., 2010. 42(6): p. 475-6
    [PMID:20502488]
  5. Wang Y,Li J
    Branching in rice.
    Curr. Opin. Plant Biol., 2011. 14(1): p. 94-9
    [PMID:21144796]
  6. Wang J,Kong L,Gao G,Luo J
    A brief introduction to web-based genome browsers.
    Brief. Bioinformatics, 2013. 14(2): p. 131-43
    [PMID:22764121]
  7. Luo L,Li W,Miura K,Ashikari M,Kyozuka J
    Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.
    Plant Cell Physiol., 2012. 53(10): p. 1793-801
    [PMID:22960246]
  8. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]
  9. Cruz-Garcia GS,Struik PC
    Spatial and Seasonal Diversity of Wild Food Plants in Home Gardens of Northeast Thailand1.
    Econ. Bot., 2015. 69(2): p. 99-113
    [PMID:26160981]
  10. Srikanth B, et al.
    Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.
    Gene, 2016. 576(1 Pt 3): p. 441-50
    [PMID:26519999]
  11. Perignon M, et al.
    Impact of Multi-Micronutrient Fortified Rice on Hemoglobin, Iron and Vitamin A Status of Cambodian Schoolchildren: a Double-Blind Cluster-Randomized Controlled Trial.
    Nutrients, 2016.
    [PMID:26751473]
  12. Kim SR, et al.
    Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
    Rice (N Y), 2016. 9(1): p. 12
    [PMID:26987543]