PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015382.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WOX
Protein Properties Length: 217aa    MW: 25417 Da    PI: 6.4052
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015382.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-201374157
                 TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++ R+++t+eq+++L elF+   r+p+++++++++++l    +++ ++V++WFqN++a+e++
  Aco015382.1 13 KCGRWNPTAEQVKVLTELFRAgLRTPTTDQIQRISTHLssfgKIESKNVFYWFQNHKARERH 74
                 568*****************99**************************************95 PP
2Wus_type_Homeobox111.54.5e-361475364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+Pt+eQ+k+L+el+++GlrtP++++iqri+++L+++Gkie+kNVfyWFQN+kaRer++
        Aco015382.1 14 CGRWNPTAEQVKVLTELFRAGLRTPTTDQIQRISTHLSSFGKIESKNVFYWFQNHKARERHH 75
                       78**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.1391075IPR001356Homeobox domain
SMARTSM003890.00311279IPR001356Homeobox domain
PfamPF000462.1E-171474IPR001356Homeobox domain
SuperFamilySSF466894.38E-111577IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-71673IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010078Biological Processmaintenance of root meristem identity
GO:1902459Biological Processpositive regulation of stem cell population maintenance
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDDQAAGRA GVKCGRWNPT AEQVKVLTEL FRAGLRTPTT DQIQRISTHL SSFGKIESKN  60
VFYWFQNHKA RERHHHYHRR HPHHRHHHHH LKKRRRGASP ALDDDDDDDD DDDDDDETTT  120
LLLLMPPETK RDQPSRTNYN HRLFIPSYAN ADQEAISWEQ PKREIETLEL FPLKSYDLQE  180
AHEKLRYVRS GADCTDISFF DTESDPPLEL RLSSFL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0383313e-73KF038331.1 Triticum aestivum wuschel-related homeobox protein (WOX5c) mRNA, complete cds.
GenBankKF0383463e-73KF038346.1 Aegilops tauschii isolate AS2386 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383473e-73KF038347.1 Aegilops tauschii isolate AS2393 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383483e-73KF038348.1 Aegilops tauschii isolate AS2395 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383493e-73KF038349.1 Aegilops tauschii isolate AS2399 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383503e-73KF038350.1 Aegilops tauschii isolate AS2404 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBankKF0383513e-73KF038351.1 Aegilops tauschii isolate AS2407 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113668.11e-160WUSCHEL-related homeobox 9-like
SwissprotQ8W0F15e-79WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLA0A199V5M71e-113A0A199V5M7_ANACO; WUSCHEL-related homeobox 9
STRINGOPUNC01G36520.19e-78(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.13e-32WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  3. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  4. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  5. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]