PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015463.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WOX
Protein Properties Length: 159aa    MW: 17218.1 Da    PI: 10.0394
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015463.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.57.2e-2147106357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++tkeq+ +Le l+++  r+psae++++++ kl     ++ ++V++WFqN++a++++
  Aco015463.1  47 SRWNPTKEQISILEGLYKQgIRTPSAEQIQQITGKLreygAIEGKNVFYWFQNHKARQRQ 106
                  7*****************99**************************************97 PP
2Wus_type_Homeobox118.33.3e-3846108365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt+eQi iLe lyk+G+rtP++e+iq+it +L+eyG+ie+kNVfyWFQN+kaR+rqkq
        Aco015463.1  46 SSRWNPTKEQISILEGLYKQGIRTPSAEQIQQITGKLREYGAIEGKNVFYWFQNHKARQRQKQ 108
                        79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.81942107IPR001356Homeobox domain
SuperFamilySSF466894.11E-1343114IPR009057Homeodomain-like
SMARTSM003891.5E-544111IPR001356Homeobox domain
PfamPF000461.2E-1847106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-847106IPR009057Homeodomain-like
CDDcd000864.05E-548108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEEEAKISSS SPPPPASTTT TTTATPSSFA NTSSHANANA NASSGSSRWN PTKEQISILE  60
GLYKQGIRTP SAEQIQQITG KLREYGAIEG KNVFYWFQNH KARQRQKQKQ ETFAYFSRLL  120
HHATPPPPPP PLLQPQPLSP PPQSPSSLSH APPCTNST*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020114303.11e-107WUSCHEL-related homeobox 2-like
SwissprotQ6X7K19e-46WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLA0A199UMJ72e-53A0A199UMJ7_ANACO; WUSCHEL-related homeobox 2
STRINGGSMUA_Achr10P26570_0013e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-39WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]