PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015492.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

M-type_MADS

Protein Properties

Length: 164aa MW: 18661.9 Da PI: 11.7942

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015492.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.3	6.5e-31	91	141	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss Aco015492.1 91 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 141 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.127	83	143	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-42	83	142	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	85	105	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-30	85	149	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	85	139	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.04E-39	85	146	No hit	No description
Pfam	PF00319	2.1E-27	92	139	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	105	120	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-31	120	141	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MAPLFTIAPR LLFRLFSNKG RIRKGVFFFV VPSRIPNKGF PSLDQKNSPF CTPPLFSPRL 60 LPFLGLLEVR LLGWGEEEGA ERMVRGKTEI KRIENATSRQ VTFSKRRNGL LKKAFELSVL 120 CDAEVALIVF SPRGKLYEFS SSRFHRKMTK PRGDRSRTSS IQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	2e-17	85	150	2	67	Myocyte-specific enhancer factor 2A
3mu6_B	2e-17	85	150	2	67	Myocyte-specific enhancer factor 2A
3mu6_C	2e-17	85	150	2	67	Myocyte-specific enhancer factor 2A
3mu6_D	2e-17	85	150	2	67	Myocyte-specific enhancer factor 2A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213915	3e-54	AC213915.1 Oryza minuta clone OM__Ba0240A18, complete sequence.
GenBank	AC215814	3e-54	AC215814.1 Oryza minuta clone OM__Ba0123B04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020084131.1	2e-99	uncharacterized protein LOC109707344 isoform X2
TrEMBL	A0A199ULK7	9e-49	A0A199ULK7_ANACO; Agamous-like MADS-box protein AGL14

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	6e-36	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Aco015492.1