PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015543.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRF
Protein Properties Length: 250aa    MW: 25052.4 Da    PI: 9.9717
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015543.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC83.12.3e-26133177145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
  Aco015543.1 133 EPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEP 177
                  69****************************************996 PP
2QLQ63.94.1e-2268103237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  aFT +Qlq+L++Q+l+yKy+aa++PvP +L+++i+k
  Aco015543.1  68 AFTFMQLQELEHQALIYKYMAAGVPVPVHLVLPIWK 103
                  8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-967103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.93668103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1568102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.253133177IPR014977WRC domain
PfamPF088791.2E-22134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009624Biological Processresponse to nematode
GO:0009631Biological Processcold acclimation
GO:0016036Biological Processcellular response to phosphate starvation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0050826Biological Processresponse to freezing
GO:0051365Biological Processcellular response to potassium ion starvation
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEEASPPSK VPRLSSDPSA GGGGVVTIAA AAAAAAAAAA PLVLGLGLGL GASGGAVAAA  60
AGAQNKAAFT FMQLQELEHQ ALIYKYMAAG VPVPVHLVLP IWKSVAASSF GPFHFPSLMG  120
LGSLCYDYRN SMEPEPGRCR RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEPPPG  180
AAPAPAPLGT GTGTGTGNGT AGLQLMPAAA NSSGASSSSG SSNNVSPHNL GFSPTSVLHS  240
GAACRTGPI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085188.11e-179growth-regulating factor 10-like
SwissprotQ6EPP91e-70GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A199UIJ11e-111A0A199UIJ1_ANACO; Growth-regulating factor 10
STRINGXP_008780035.18e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-38growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]