PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015615.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 292aa    MW: 32185 Da    PI: 11.0869
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015615.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.17.6e-18611732106
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn........sseelaalklfsevsPil 91 
                  +elL+ cA+ +  gd+ +a++l a l   +sp gd+  Rla+ f++AL   l  + ++  ++ +  +++ +         + ++ + +  f++++P+l
  Aco015615.1  61 RELLVGCADLFGRGDFPAARRLAASLLSSSSPLGDSSDRLAHRFARALLLLLPPQHHQQHQQHQQHQQELSLlvdddppqQPHHPHPYLSFNQITPFL 158
                  689***********************************************9999444444433333333222544444434444444466******** PP

         GRAS  92 kfshltaNqaIleav 106
                  +fshltaNqaIl+a+
  Aco015615.1 159 RFSHLTANQAILDAA 173
                  *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.7634291IPR005202Transcription factor GRAS
PfamPF035142.6E-1561173IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLSSLNNPSS SSIKSHDDHD SEEDPHPHPQ HQHHHHQFPP NPNFHVSTAA TPSPSLSPSP  60
RELLVGCADL FGRGDFPAAR RLAASLLSSS SPLGDSSDRL AHRFARALLL LLPPQHHQQH  120
QQHQQHQQEL SLLVDDDPPQ QPHHPHPYLS FNQITPFLRF SHLTANQAIL DAASWPAAHR  180
TNRIDATPPR LQWPRSSSPP TSPTPRLPPH HRAQATDPRP VPASTKPGPT SPRSFAAFPQ  240
PPLHSTPPPP LPPPPTSPHL RRSQFPPPSP LPLRNPRPQL PLLPPQTSLQ R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109912.13e-37LOW QUALITY PROTEIN: protein MONOCULM 1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-07GRAS family protein