PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015722.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SRS
Protein Properties Length: 373aa    MW: 38166.1 Da    PI: 9.6521
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015722.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.67.7e-651183053153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstklss 93 
                   g++sCqdCGnqakkdCah+RCRtCCksrgf+C thvkstWvpa+krrerqq+laaa++   + +       a ++skr+re   + +++ + ++  +
  Aco015722.1 118 GGGVSCQDCGNQAKKDCAHMRCRTCCKSRGFQCPTHVKSTWVPASKRRERQQHLAAAAAALHNPRrlaaaaaAPDTSKRPREICPRPAATPAVASAGT 215
                  5789*************************************************998766544433567776677889999998665555554444333 PP

       DUF702  94 aeskkeletss..........................lPeevsseavfrcvrvssvdd....geeelaYqtavsigGhvfkGiLydqGle 153
                   +s ++  + +                          +P+evss+avfrcvrvs++d+    +e+elaYqtav igGhvf+GiLydqG+e
  Aco015722.1 216 RSSATQKLFLNhflldrrflknlklilsvllgmegvsFPAEVSSPAVFRCVRVSTMDEaaaaAEDELAYQTAVRIGGHVFRGILYDQGPE 305
                  33322222222468999****************************************965555899**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-63120305IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-27122164IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-23253304IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAGFSLGGGR RGSEGGENEQ QHQHAAAAAA AAVIPPDSLF LFGGGTNQQP DISYPRGFEL  60
WQHHHHPQLP SSAAAAAALI GFSSDHQLPA GRIVMRGGGG GGRSGGAAAA GSSGGGGGGG  120
VSCQDCGNQA KKDCAHMRCR TCCKSRGFQC PTHVKSTWVP ASKRRERQQH LAAAAAALHN  180
PRRLAAAAAA PDTSKRPREI CPRPAATPAV ASAGTRSSAT QKLFLNHFLL DRRFLKNLKL  240
ILSVLLGMEG VSFPAEVSSP AVFRCVRVST MDEAAAAAED ELAYQTAVRI GGHVFRGILY  300
DQGPEPSSST PPAAALAAAA AAVSGSMAAG PSAVVSAGML DAPNLSSSSL QYPTPLSAFM  360
AGTQFFPHHP RP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096500.11e-177protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A199VIU61e-171A0A199VIU6_ANACO; Protein SHORT INTERNODES
STRINGGSMUA_Achr5P14410_0012e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.14e-45Lateral root primordium (LRP) protein-related