PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015920.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 769aa    MW: 83662.8 Da    PI: 4.3627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015920.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.8e-12178219346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT +E +ll++a +++G + W+ Ia+++  ++t  qc +++++
      Aco015920.1 178 NWTDQETLLLLEALELFGEN-WSEIAEHVA-TKTKVQCMLHFLQ 219
                      7*****************88.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093411.742152IPR007526SWIRM domain
SuperFamilySSF466891.08E-5144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.106.4E-4248IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS501359.012116162IPR000433Zinc finger, ZZ-type
SMARTSM002917.9E-9116160IPR000433Zinc finger, ZZ-type
SuperFamilySSF578507.42E-10118152No hitNo description
PfamPF005692.9E-9119154IPR000433Zinc finger, ZZ-type
CDDcd023364.11E-19120164No hitNo description
PROSITE patternPS013570122148IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129320.928174225IPR017884SANT domain
SuperFamilySSF466891.27E-12175227IPR009057Homeodomain-like
SMARTSM007171.1E-12175223IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-9176217IPR009057Homeodomain-like
PfamPF002492.1E-11178220IPR001005SANT/Myb domain
CDDcd001677.72E-4197220No hitNo description
PfamPF164953.1E-23648725IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MQKFHADPNV QVELKDFSEL SVGDADAKQE AFEFLDHWGL INFHPFPPSG TNDSKSDGDN  60
GDDKMSSIVG KLYQFDTVQS YINSAHKKAE PTMPAPPPSL ISETALADAL VITLEPSVEY  120
HCNSCSADCS RKRYHCQTQA DFDLCIDCFN ERKFDPGMSP ADFILMGPAE APGASGANWT  180
DQETLLLLEA LELFGENWSE IAEHVATKTK VQCMLHFLQM PIEDSFLDGD DEINESIQEK  240
AETTSADKEL ASTTVPEKME VENQVEEKEK EEEEKKEKDS EDEKESSDVK MSEKIEGENT  300
GGKESDAINL PDNKDVENSG KADLPIKSDT DDTEKKNTDN ISSESASDSA VDALKLAFQA  360
VGFFSENGEL GSFAEAGNPV MALAAFLVAL VEHDNAITSC RSSLKAISEE SPAIQLATRH  420
CFILEDPPGD MKSKIASKGA ECQKDEDQTL SLNGTDKLKD SKEQSEENAL SLEKKMDPSA  480
LTKGELKLPD EKVLGNEGPL SEAAVNNIRS SGDQKDATDA NLPAVPPTNN TKESVVLDSR  540
EAAESVEKKM NDLKSVGEEK PLNVKVGDLD SQDKGEIDTL KSKDTGAAPA ANGEQESKQT  600
SEPGSTLQKR EEAGEGDKKE VASTDDKSAN LDSSHGNYAL IRLKRAAATA LSAAAVNSKL  660
LAKQEEEQIQ QLVLSIIEKQ FHKLESKLAL FADLENIILR IREQTERTKQ RLLHERSQII  720
AARLGLPAPS FRPNPTSVPP GRYPAGYGMP STNSLNVVAQ KPPAMRRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092009.10.0SWI/SNF complex subunit SWI3D
TrEMBLA0A199W9880.0A0A199W988_ANACO; SWI/SNF complex subunit SWI3D
STRINGXP_008790351.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45421214