PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco015964.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 388aa    MW: 43025.5 Da    PI: 9.1512
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco015964.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32213266255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Aco015964.1 213 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 266
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15210267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28211267IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-24213266IPR006447Myb domain, plants
PfamPF002496.7E-7214265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPAST TTTTPPPSWR KQQQDHGNME LGFWRRALAS SSSSSSSSSM  60
SKELLHGASF DLSLANPSPT DPPHNNNNNS SSNLLLHPPH HHHHHLHFLH HHPQPLLQDG  120
VLMRPIRGIP LYKHHLHNTS SSCTSSPLPL LPHYHHHHHQ QHQQQQQQQQ QQQQLCDHSS  180
STNNFAPFVA SQGLLSRARY LSKFPTKRSV RAPRMRWTST LHARFVHAVE LLGGHERATP  240
KSVLELMDVK DLTLAHVKSH LQMYRTVKNT DKPVSPGQSD GFENGSTGEI SDDNLGDIHS  300
TQRSESSTQH GKLGNQHGSN YGGLWSNSSS RGGWSNGLPS ESTTGSLHNF KEKQPKSFEI  360
SDMNSSCLSE TSSPSKPNLE FTLGRPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16214268458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113463.10.0probable transcription factor KAN2 isoform X1
SwissprotQ9C6169e-73KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A199UUQ40.0A0A199UUQ4_ANACO; Putative transcription factor KAN2
STRINGXP_008802564.11e-115(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-49G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]