PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016066.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 210aa    MW: 24371.2 Da    PI: 7.7473
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016066.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32129187159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+++fprsYY+Ct++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Aco016066.1 129 LDDGYRWRKYGQKAVKNNKFPRSYYKCTHQGCWVKKQVQRLSKDEGVVVTTYEGMHTHP 187
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33114187IPR003657WRKY domain
SuperFamilySSF1182901.31E-29121188IPR003657WRKY domain
PROSITE profilePS5081129.78124189IPR003657WRKY domain
SMARTSM007741.3E-38129188IPR003657WRKY domain
PfamPF031064.7E-26130187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MENYSILFPS QPCSSSPPDP SYYSPHDDHH LNDHSQIFLS QHFHNNPSSG FMVLKELKEV  60
EEEAKLTHAL SYHQAYNEAH PNMEYSALDD EPARGELAKV ADEKSKKKGE KKARRPRYAF  120
QTRSQVDILD DGYRWRKYGQ KAVKNNKFPR SYYKCTHQGC WVKKQVQRLS KDEGVVVTTY  180
EGMHTHPIEK SNDNFESILI NQMQLYPSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27119188776Probable WRKY transcription factor 4
2lex_A3e-27119188776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111363.11e-158probable WRKY transcription factor 75
TrEMBLA0A199UK831e-115A0A199UK83_ANACO; Putative WRKY transcription factor 75
STRINGSi026859m2e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-52WRKY DNA-binding protein 75