PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016102.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 233aa    MW: 26681.9 Da    PI: 9.2486
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016102.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-12109150351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Aco016102.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                  79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.87384163IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-8108153IPR016177DNA-binding domain
SMARTSM003801.0E-4108165IPR001471AP2/ERF domain
PfamPF008475.0E-6108151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-6111155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRRLL GYSFVKNLFA VDLPKHNEDE KMVENSTLHV KSSSVHPLPP IKLDTQMPES  60
NSESVPESSN AATSDSPKEE LNHYYPGKEI KRRKRHRRKH YDDHEPCIMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEEEKEELRS YKWEDFLAMT  180
RSAINNKKHQ RKPGVGGRRK KSENQLQSEG ETEKEMANSS ASGDGDVDAF AS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6660472e-92KM666047.1 Ananas bracteatus clone 51264b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020112039.11e-174ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLM0T4P94e-89M0T4P9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06510_0016e-90(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.21e-36ERF family protein