PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016125.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 354aa    MW: 40007.1 Da    PI: 4.8196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016125.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09160207455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k + Ka +L + ++Y++sLq
  Aco016125.1 160 SHSLAERVRREKISERMKLLQNLVPGC----NKVMGKALMLDEIINYVQSLQ 207
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-9154211No hitNo description
SuperFamilySSF474595.23E-17154221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-17156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMENNDPFFS AINTAAAAAA ASAANYFPWR RPQLLGSADL DAPRNRSARR KRKRKSSHGV  60
RRRRRSSVKE EEEENNDNDD DDDEEEEDEE DENPLLSPNK LTDQDSNPKR CRADQSERTA  120
TINPKTAEIG ANRDSNEKEN SSSKQDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ  180
NLVPGCNKVM GKALMLDEII NYVQSLQRQV ELLSMKLAAV NPLDFCVNSL LRPKDMNNRA  240
QQQQAPDLPA AQIYHRSENS SAGSSYSQRI NGTPLESFEN KFVFDELDPS FCSSISMEFP  300
TLNGFADATQ LGNFWEDDLQ SVVQMGFFGQ SRDAQANLLA ELLRPCDDRQ QED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RRKRKR
24854RRKRKRK
34864RRKRKRKSSHGVRRRRR
44954RKRKRK
55064KRKRKSSHGVRRRRR
65364RKSSHGVRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6643281e-165KM664328.1 Ananas bracteatus clone 49132a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020111200.10.0transcription factor bHLH62-like isoform X1
SwissprotQ9SRT28e-55BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A199VW671e-167A0A199VW67_ANACO; Transcription factor bHLH62
STRINGGSMUA_Achr6P27780_0014e-69(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]