PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016213.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 247aa    MW: 26820.6 Da    PI: 7.0419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016213.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-2073122255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa a+++a+++++g
  Aco016213.1  73 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAERAAMAYDEAALRFKG 122
                  8********.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.51E-3172131No hitNo description
Gene3DG3DSA:3.30.730.102.4E-3272131IPR001471AP2/ERF domain
PROSITE profilePS5103224.85673130IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2273131IPR016177DNA-binding domain
PfamPF008479.3E-1573122IPR001471AP2/ERF domain
SMARTSM003802.6E-3673136IPR001471AP2/ERF domain
PRINTSPR003671.3E-117485IPR001471AP2/ERF domain
PRINTSPR003671.3E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFGRYDPARA EQDTSAIVSA LSHVLHSSSN SAHGAVAEPV GANRASAEPA GSDSAGMNEV  60
ITRPSEDQER RKHYRGVRRR PWGKWAAEIR DPNKAARVWL GTFDTAERAA MAYDEAALRF  120
KGSKAKVNFP ERAVLKHHNT VDINIDRRPE LPPPLPPPTM INPNTTTTTT TTATATATAT  180
AGAYPNIIQY VNILHSSEEM PSSTYMDFSL GHIMTSSNVG SYSSSSSGSS WSHGEPREKD  240
TTYEME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2572132465ATERF1
3gcc_A5e-2572132465ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16979RRKHYRGVRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106692.11e-136ethylene-responsive transcription factor ERF113
SwissprotQ9FH547e-39EF114_ARATH; Ethylene-responsive transcription factor ERF114
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-30related to AP2 6l
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]