PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016242.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 195aa    MW: 22097.3 Da    PI: 12.1491
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016242.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-067591926
                 GGGTS--TTTTT-SS-SS CS
      zf-CCCH  9 fartGtCkyGdrCkFaHg 26
                 f++ G C++Gd C +aHg
  Aco016242.1 75 FRK-GSCRHGDACEYAHG 91
                 666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.546593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-56894IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-47592IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-47591IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MYWAAGWSRG TAHPAEPPAR KDRRSTHALH VALNQVPPTR RPARRVVLNQ APPSTYEYIR  60
NVSNRLGADA CPXEFRKGSC RHGDACEYAH GVFESWLHPA QYRTRLCKDE TGCARRVHPQ  120
ARRAPRRQPF PPLRLRQPRP PLPSLLQLRR RRRHTHPLPA AAVDPAAAVV VIPLLVLRPA  180
ELHPRLRSAG RVHR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6634285e-59KM663428.1 Ananas bracteatus clone 47858 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199VY984e-23A0A199VY98_ANACO; Zinc finger CCCH domain-containing protein 33
STRINGGSMUA_Achr6P32910_0012e-22(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.27e-22C3H family protein