PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016257.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 261aa    MW: 28031.3 Da    PI: 5.0553
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016257.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07443538
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                  C+ +  + ++ fC d++  lC+ C    H+       H+
  Aco016257.1  4 QCDVCAAEAASVFCCDDEAALCAACDRRVHRAnklagkHR 43
                 7*****************************7677777776 PP
2zf-B_box25.62.5e-0870102335
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 
                  ++ C+ ++e +  lfC++++  lC+dC + +H 
  Aco016257.1  70 PPLCDICQERRGLLFCREDRAILCRDCDVPIHT 102
                  689**************************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
CDDcd000211.87E-6345No hitNo description
PfamPF006433.4E-6444IPR000315B-box-type zinc finger
SMARTSM003363.7E-1368115IPR000315B-box-type zinc finger
PROSITE profilePS501199.51368115IPR000315B-box-type zinc finger
PfamPF006431.7E-670110IPR000315B-box-type zinc finger
CDDcd000211.72E-871115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCDD EAALCAACDR RVHRANKLAG KHRRFSLLLP SSPPSSSSSS  60
SSSSSQFRAP PLCDICQERR GLLFCREDRA ILCRDCDVPI HTASDLAMRH SRFLLTGIRL  120
SSAPLDESAR NNGASTAEDG RSPGKVSREI MLAASVAAAE EEAVCSNSSS ISEYLIKTLP  180
GWRVEEFLTD DAAPAAAANQ SYQGVENQYC NVGVGLKAEA EAEAEAEAEA EAALRVPQMY  240
NEWRGVGGDN KRSRNCFSNW *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935916e-50FP093591.1 Phyllostachys edulis cDNA clone: bphylf056b15, full insert sequence.
GenBankFP1008716e-50FP100871.1 Phyllostachys edulis cDNA clone: bphyem121a23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085311.11e-143B-box zinc finger protein 20-like
SwissprotQ0IGM72e-52BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A199W9581e-134A0A199W958_ANACO; B-box zinc finger protein 20 (Fragment)
STRINGPavir.Gb01186.1.p7e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.14e-39DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]