PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016279.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family YABBY
Protein Properties Length: 227aa    MW: 24706.1 Da    PI: 7.3875
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016279.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY232.11.3e-71171896170
        YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl..deslkee....lleelkveeenlksnvekeesastsvs 97 
                   seq+Cyv+CnfC+t+lav vP +slfk+vtvrCGhCt+llsvn++    ll+a ++l  ++++  +    ll+e      +l + +++ + +++  +
  Aco016279.1  17 PSEQLCYVHCNFCDTVLAVGVPCSSLFKTVTVRCGHCTNLLSVNMRG--LLLPAANQLlfGQAFFAPshhtLLDEIPYPPPSLLMDHHQANVSNHGST 112
                  68****************************************77655..5666666652344443334566777777766666666555555444444 PP

        YABBY  98 sekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  ++++    + +e+ e+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  Aco016279.1 113 NNNMvapvKGSEEVELPQTPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 189
                  4444455588899999***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-7217189IPR006780YABBY protein
SuperFamilySSF470951.18E-7133182IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4138181IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSSSSAAFSL DHLSPPPSEQ LCYVHCNFCD TVLAVGVPCS SLFKTVTVRC GHCTNLLSVN  60
MRGLLLPAAN QLLFGQAFFA PSHHTLLDEI PYPPPSLLMD HHQANVSNHG STNNNMVAPV  120
KGSEEVELPQ TPVVNRPPEK RQRVPSAYNR FIKDEIQRIK AGNPDITHRE AFSAAAKNWA  180
HFPHIHFGLM PDQGLKKTSV RPQEGEDVLL KDGLYAAAAA NLGAHF*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085175.11e-169protein YABBY 4-like
SwissprotQ01JG22e-94YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-94YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2H3XPU01e-131A0A2H3XPU0_PHODC; protein YABBY 4-like
STRINGXP_008787013.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-80YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]