PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016402.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ZF-HD
Protein Properties Length: 390aa    MW: 40757.1 Da    PI: 6.0716
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016402.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer75.86.2e-24101148557
  ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  rY+eCl+NhAa lGgh+vDGCgEf p      +   +kCaACgCHR+FHR+  
  Aco016402.1 101 RYRECLRNHAACLGGHVVDGCGEFAPG-----ERFPMKCAACGCHRSFHRQLD 148
                  8*************************7.....5689**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-20101146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-13101146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-20101146IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.746102147IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.59E-16285350IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-25286350IPR009057Homeodomain-like
TIGRFAMsTIGR015654.5E-24290347IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEFNKMHDDD DDDNNDDEEE AEEEEEAPNH NNNSNNNNNN NNNKTKINKP YSPPPLDLSP  60
FSKPLLSPSA SLLRPHGAGA GGGGGGGGGG GGGGGGGGGG RYRECLRNHA ACLGGHVVDG  120
CGEFAPGERF PMKCAACGCH RSFHRQLDAA EAAAAAAAAG AGAEARNGRM CVAGDVPRSL  180
LLPDPAAALP CFPNNFPPPP PPPPPPPPPP HRLPSTVRNN LPRVVLPTPP PLSATEPPPP  240
HRPRPRPRPR RRSPKKPPQI APAADRAPAR APAPAAGLAL AAGPAAAAGK KRYRTRFTAE  300
QKERMVGFAE TVGWRLQKGD EAAADAFCAA VGISRQVLKV WMNNNKQTKR PQKSPNKAAA  360
VAAEDEAAVA AEDEEELEED EDEEENEGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-222913481875ZF-HD homeobox family protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241251RPRPRPRPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678350.0KM667835.1 Ananas bracteatus clone 53275a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097991.10.0zinc-finger homeodomain protein 8-like
TrEMBLA0A199VY822e-51A0A199VY82_ANACO; Zinc-finger homeodomain protein 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-16homeobox protein 22