PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016428.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NF-YB
Protein Properties Length: 168aa    MW: 19006.4 Da    PI: 4.2657
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016428.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB70.43.2e-22301041185
        NF-YB  11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                  a + +i+k++lP + ++++da++++ ec +efi +v+se++d c+re++kti+++ +l al +lGf +y+e++ +
  Aco016428.1  30 ATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLVSSESNDVCNREDKKTIAPEHVLKALEDLGFGEYIEEVYA 104
                  67889******************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-3510152IPR009072Histone-fold
SuperFamilySSF471135.12E-3230151IPR009072Histone-fold
PfamPF008081.9E-183090IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MEPMEIVGKS KEDVSLPKDE THNFCYYFSA TMFKIIKEML PPDVRVARDA QDLLVECCVE  60
FINLVSSESN DVCNREDKKT IAPEHVLKAL EDLGFGEYIE EVYAAYEQHK MDTLDSPKGG  120
KFVGIEMTEE EALAEQQRMF AEARARMNNG LNPQKQSDSD PDRSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B4e-333014419133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097205.11e-108protein Dr1 homolog
SwissprotP495925e-77NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A199ULN41e-107A0A199ULN4_ANACO; Protein Dr
STRINGXP_008787932.13e-89(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.45e-81nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]