PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016639.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 299aa MW: 31004.7 Da PI: 11.3696

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016639.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	215	3.8e-66	2	298	84	374
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisq.GlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpf 176 ++e+ P+++++ l+aN a+l+a+ + +H++Dfd++ G+Q +aL++aLa+R +p lRiT+v +p+s + ++g+rL k+Ae+ gv + Aco016639.1 2 LHELHPCFRLGLLAANLAVLDAARDRSGIHVLDFDVGGgGAQHAALIRALAER--RAPGLRITAVFDPTSPftpaAAAGALAVGDRLVKLAERAGVGL 97 7899******************************86268*******9..5789****998889988889999************ PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +f+v v++r ++l+ +L + pgEalaVnl+++l r++desvs +++rde+L+ v+ l+P+vv +ve++++ n+++F++rf+ea+ +y al++sl+a Aco016639.1 98 RFSV-VSRRAAELDAAALGCVPGEALAVNLAFALSRVPDESVSPANPRDELLRRVRALRPRVVALVERDMNANTAPFAARFAEACAHYGALLESLDAA 194 9.7**************************************************************************************888 PP GRAS 275 lpres.....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366 +++++ er+ vE++l +++ + +g + +er+ ++ r+++aGF++vpl+ +++ +++ l + + g++++ee g + + W++r Aco016639.1 195 AASAAslggaAERARVEAALAAQRRERRWRGRGGA-VERCGVSGS-GGRMGMAGFGAVPLGPGVVEPVRTRLGSIRpNPGFTIKEEAGGIGFAWMGRV 290 77766355556666666666655555555555554.667665555.689***********************9***************** PP GRAS 367 LvsvSaWr 374 L+++SaWr Aco016639.1 291 LTFASAWR 298 *****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.403	1	277	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-63	2	298	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MLHELHPCFR LGLLAANLAV LDAARDRSGI HVLDFDVGGG GAQHAALIRA LAERRAPGLR 60 ITAVFDPTSP FTPAAAAGAL AVGDRLVKLA ERAGVGLRFS VVSRRAAELD AAALGCVPGE 120 ALAVNLAFAL SRVPDESVSP ANPRDELLRR VRALRPRVVA LVERDMNANT APFAARFAEA 180 CAHYGALLES LDAAAASAAS LGGAAERARV EAALAAQRRE RRWRGRGGAV ERCGVSGSGG 240 RMGMAGFGAV PLGPGVVEPV RTRLGSIRPN PGFTIKEEAG GIGFAWMGRV LTFASAWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-27	2	298	83	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093246.1	0.0	LOW QUALITY PROTEIN: scarecrow-like protein 8
Swissprot	Q9FYR7	8e-80	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A427BAE1	1e-121	A0A427BAE1_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr4P26400_001	1e-119	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	5e-19	SCARECROW-like 8

Link Out ? help Back to Top
Phytozome	Aco016639.1