PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016654.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 205aa    MW: 23429.5 Da    PI: 9.5515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016654.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B388.94.2e-2827135196
                  EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+kv tpsdv+k++rlv+pk++ae+h              g  + +++ l++e  ++gr W+++++y+ +s++yv+tkGW++Fv++++L++gD v F 
  Aco016654.1  27 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqqqqrqqpgrvG--EGKGVVLSFEEeRTGRLWRFRYSYWSSSQSYVMTKGWSRFVREKRLRAGDAVSFA 122
                  99*************************99888776665332..348889999997889**************************************** PP

                  E-SSSEE..EEEE CS
           B3  84 ldgrsefelvvkv 96 
                  +    +++l++++
  Aco016654.1 123 HAVGARGRLFIRW 135
                  8755777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-3622141IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-2725137IPR015300DNA-binding pseudobarrel domain
CDDcd100176.66E-2026134No hitNo description
SMARTSM010192.4E-1927137IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28127139IPR003340B3 DNA binding domain
PfamPF023621.1E-2427135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKEEEEEEHD RNDITGLSNY VETELMFEKV VTPSDVGKLN RLVIPKQHAE KHFPLQQQQR  60
QQPGRVGEGK GVVLSFEEER TGRLWRFRYS YWSSSQSYVM TKGWSRFVRE KRLRAGDAVS  120
FAHAVGARGR LFIRWATRAG PRGPAAVLQR ASFVPAWEYY YRNHPTGGQG GPTKRLRLFG  180
VNLECPNSEC ADTDEPSYII PLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-452314010119DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094561.11e-151B3 domain-containing protein Os03g0120900-like
SwissprotQ7F9W21e-47Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLA0A199W5B71e-149A0A199W5B7_ANACO; B3 domain-containing protein
STRINGGSMUA_Achr1P03600_0013e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.14e-47RAV family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]