PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016696.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 239aa    MW: 26104.5 Da    PI: 7.8957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016696.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1756107156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  + y+GVr +   grWv+e+r+p    k+ r++lg++ t+e+Aa+a++ a+++l+ge
  Aco016696.1  56 PVYRGVRSRN-GGRWVCEVREPH---KKSRIWLGTYPTPEMAARAHDVAALALRGE 107
                  68****9666.9******99962...25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1256107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-3057116IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2157116IPR016177DNA-binding domain
SMARTSM003809.7E-2857120IPR001471AP2/ERF domain
PROSITE profilePS5103222.23457114IPR001471AP2/ERF domain
CDDcd000181.09E-2558116No hitNo description
PRINTSPR003677.9E-85869IPR001471AP2/ERF domain
PRINTSPR003677.9E-88096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009631Biological Processcold acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDDSTSSSSN GCSPTERSPA AKSPCSSSSS SLHAPAPTPS LKRKAGRKKF RETRHPVYRG  60
VRSRNGGRWV CEVREPHKKS RIWLGTYPTP EMAARAHDVA ALALRGEAAP LNFPDSVWKL  120
PRAGSGSADD VRFAAAKAAE MFRPCALHES PPLLKWETSS PAKKLPAPPS TDQGWIGEAD  180
EEKVVRPAAV YLDEELVFNM QGLMDDMAKG MMLTPPALRR AFDWDADECA EDWTLWAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13551141272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00452DAPTransfer from AT4G25470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107363.11e-174dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI42e-62DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-62DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A199UEH71e-172A0A199UEH7_ANACO; Dehydration-responsive element-binding protein 1F
STRINGXP_008807522.11e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-38C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]