PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016738.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NAC

Protein Properties

Length: 232aa MW: 26106.2 Da PI: 6.5403

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016738.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.1	4.1e-37	1	120	12	127
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLp.k...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 eel+++yL +k+e+++l++e+vi+ vd+y+++P++Lp + + + + ++w+fF++r++++++g r+ r+t gyWkatg+ v+s++++++g+kk Aco016738.1 1 EELLSFYLVNKLESRRLDIERVIPVVDVYTCDPSQLPpMsgdA-SIrDPEQWFFFCPRQERETQGGRPARTTPFGYWKATGSPSYVYSSGNKVIGVKK 97 79***************9************9544532.222556******************************************** PP NAM 105 tLvfykgrapkgektdWvmheyr 127 t+vfy+grap+g+kt+W m+ey+ Aco016738.1 98 TMVFYRGRAPNGTKTTWKMNEYK 120 ********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	4.3E-16	1	120	IPR003441	NAC domain
PROSITE profile	PS51005	40.554	1	148	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-40	1	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
EELLSFYLVN KLESRRLDIE RVIPVVDVYT CDPSQLPPMS GDASIRDPEQ WFFFCPRQER 60 ETQGGRPART TPFGYWKATG SPSYVYSSGN KVIGVKKTMV FYRGRAPNGT KTTWKMNEYK 120 ALREEALGLP ATAPRLRNEF SLCRLYIKTT TLRSFDRRPL NPPKSEIRPS TSEAPASNTD 180 PVVAAAERAY SHDSSSSGDG GGSQQMAPDQ QGAMDYWHDL LEEFDQDFTW A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-25	1	150	26	170	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107471.1	1e-172	NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	1e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A199V3W7	1e-171	A0A199V3W7_ANACO; NAC domain-containing protein 90
STRING	XP_008776160.1	2e-89	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-66	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Aco016738.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]