PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco016748.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Protein Properties

Length: 280aa MW: 30902 Da PI: 8.7647

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco016748.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.1	5.6e-31	62	164	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae+h ++ ++ l++edesg+ W ++++y+ +s++yvltkGW+++vk+++L++gD+v+F++++ + +l++ Aco016748.1 62 FEKPLTPSDVGKLNRLVIPKQHAEKHfplaSEACDKDLLLSFEDESGKPWCFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVLFERTRAATDRLHI 159 99***********************98744444677899********************************************99887777888 PP EEE-S CS B3 95 kvfrk 99 +r+ Aco016748.1 160 ACRRR 164 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.5E-40	56	170	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.41E-30	60	167	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.17E-29	60	163	No hit	No description
PROSITE profile	PS50863	14.043	62	165	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-22	62	164	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.5E-28	62	164	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010073	Biological Process	meristem maintenance
GO:0010358	Biological Process	leaf shaping
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLLMNTIYTH HLHHSSALAR SLPLTTMPAN HQQQPPLPNY AQAMSMNPQQ YHAQTQCRER 60 LFEKPLTPSD VGKLNRLVIP KQHAEKHFPL ASEACDKDLL LSFEDESGKP WCFRYSYWTS 120 SQSYVLTKGW SRYVKEKRLD AGDVVLFERT RAATDRLHIA CRRRRPHDSP PPVPHPAAAA 180 PHFSPAPAPT AGPYASLGSV QPYDSSVLRA GDGGDGAVEG AAEAAPVVHS KRRLRLFGVN 240 LECAPELEEA PQAARSVFSL VNQTACKPTP SAPYYWSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wid_A	3e-45	59	168	11	121	DNA-binding protein RAV1
5os9_A	2e-45	58	164	4	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-45	58	164	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM663467	1e-127	KM663467.1 Ananas bracteatus clone 47888b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107562.1	0.0	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-62	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A199V3M8	1e-160	A0A199V3M8_ANACO; B3 domain-containing protein
STRING	XP_008799673.1	1e-69	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	2e-52	B3 family protein

Link Out ? help Back to Top
Phytozome	Aco016748.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]