PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016817.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 660aa    MW: 73445.3 Da    PI: 9.0846
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016817.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07552601147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Aco016817.1 552 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFddaKHRTYVDLKDKWKTL 601
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.93E-7358446IPR029071Ubiquitin-related domain
PROSITE profilePS500539.221363434IPR000626Ubiquitin domain
PROSITE profilePS5129415.565547606IPR017930Myb domain
SMARTSM007172.0E-7551604IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10552602IPR009057Homeodomain-like
SuperFamilySSF466895.04E-15553634IPR009057Homeodomain-like
CDDcd116601.82E-17553603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MLQKRLDYGS CGHHIPAMPH FPKAAKGKRS IRRKFEDNQM CAIELLATVA GKLLTEGENS  60
SSLADITRSS NPTVVKDFVK QEQIDEPTPI KSEFLDQDNC DESTLGPKEA DLPPDSGFKK  120
PNVFDKESII NSTRGEFGCL PVSESVEYKE DRSKSPLQSR LKSPKGEIIE NCPDVYSLVD  180
QMDLDVKPSA LVSSGSIAEA PLYRNHFPSC SSSPKCRDGT KPIVDRDDDE NFSGCARPST  240
ITSKVYRPHC IGDRRVRKLL APKFRHKGEL SNTETKPAFR IKKMCYTRQR TQRTLFKRRR  300
LFDHCSISSS GEEIFREGIS NSHLKGNPKK EASASHATSH GANRASSSRT DQKPSFESAD  360
YHVKLRIKSF RVPELFIEIP ETATIGSLKK TVMEAVTAIL SGGLHVGVLL QGKKVRDDNK  420
TLRQAGLSDD DKLENLGFTL EPNSAQAPQQ LTVAEDRHLL DACDVTQPLA RIPPPDHGES  480
DNTLRPILTS ITNSPESDLD SDHSPTNNMS APDKITGSSR AIVVVPPMNV EALAVVPLRK  540
PKRSELAQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL RAFDDAKHRT YVDLKDKWKT  600
LVHTARISPQ QRRGEPVPQE LLDRVLSAHA YWTQQQAKLQ PKPPVPMAES AHVDFPFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-555396434108Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252258DRRVRKL
2296300KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086620.10.0telomere repeat-binding protein 2-like isoform X6
TrEMBLA0A199UVK40.0A0A199UVK4_ANACO; Telomere-binding protein 1
STRINGXP_008784600.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5245714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-114TRF-like 2