PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016822.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 309aa    MW: 34401.2 Da    PI: 4.8913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016822.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32116172258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgy+WrKYGqK +k+s++prsYYrCt ++C++kk+vers+edp+++++tYeg H h
  Aco016822.1 116 DDGYKWRKYGQKAIKNSPNPRSYYRCTNPRCNAKKQVERSTEDPETLVVTYEGLHLH 172
                  8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-30110173IPR003657WRKY domain
PROSITE profilePS5081127.99110175IPR003657WRKY domain
SuperFamilySSF1182909.81E-27113173IPR003657WRKY domain
SMARTSM007743.4E-37115174IPR003657WRKY domain
PfamPF031069.0E-26116172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMDELDEMEQ NWHDGLGEEL MRELLDNTTP LFFSPQVAEA EEDSHRESVV NKLISTVYSG  60
PTIGDIESAL SLTSQSSDTE NQNNSRPIVS LTEKGLSKME NKYTLRIKTC GNGLSDDGYK  120
WRKYGQKAIK NSPNPRSYYR CTNPRCNAKK QVERSTEDPE TLVVTYEGLH LHYTYSHFLL  180
SRSPEFNSAG LSTAKKPKIN PMGHKNQIPD YAPHEPAPHS SAIVSSEQSQ GEDRFGDLQY  240
GLLDEDEKSA RGLGLLEDVV PLLVRKPCNS TTTSSCDPYS PQASSPSISS LSWTPNSPCI  300
DMSILSNIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-211141721674Probable WRKY transcription factor 4
2lex_A1e-211141721674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086058.10.0probable WRKY transcription factor 49
TrEMBLA0A199VPY70.0A0A199VPY7_ANACO; Putative WRKY transcription factor 49 (Fragment)
STRINGXP_008801895.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-49WRKY DNA-binding protein 49