PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016870.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 810aa    MW: 87593.6 Da    PI: 9.6113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.9e-10750798247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       rW+  E++ l  av++lG+g Wk I r      +gRt+ ++k++w++ 
      Aco016870.1 750 RRWSVLEEDTLRSAVRELGKGYWKEILRNHSdvfEGRTEVDLKDKWRNM 798
                      59***************************99****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-11744801IPR009057Homeodomain-like
PROSITE profilePS5129413.741744803IPR017930Myb domain
SuperFamilySSF466895.3E-12746800IPR009057Homeodomain-like
SMARTSM007178.6E-6748801IPR001005SANT/Myb domain
PfamPF002492.3E-7750798IPR001005SANT/Myb domain
CDDcd116601.34E-14750800No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MDPVVASWIK ELVLRQNLPL NITEGFLSML PNEPADSESE SSLRVRRGVV QRRLAEGLTR  60
RLITPYTLGT IEALYALRPL PAAVDAYRVV AVYLAASAAD FPRSVSDLWA RRIPNLLRSP  120
STAGLASPSL DAEVRELELS VTNIKLRTGI MWRNSRSKAL DAMRALLEAE YKDVGPPILE  180
LVGENVRGGG DGDGDGDEDE GEAESGSQAE AEAEAEAELA GDNVRADEAE SGSRAEGTAT  240
QTPAQVARQT PPVAAQNQAT QTPPAVAQNQ ATQTPSGEKA TEMPPQRKEM HMPPGGIEMP  300
RQTKIDGSRL GKGTTPTMNE EQENSNEAMV RDPIAHNSRL GKDTISTSNK VIEQDPAARN  360
SQLGKGTTPT SNKVIERDPA ALNNRLGKGT TLTTNEGGNS SKAMERDPTA RDSRLGKGTT  420
QTSNKVIEQD PAALNNRLGK GTTPTTNEGG NSSKAMERDP TARDSRVGKG TTTMNEKEGN  480
SSKAMEQDPT VRTYERGDGL KAKAVSPPTL VVNKRRKTRR WSVLEEDTLR SATPPVAAQN  540
QATQTPPAVA QNQATQTPSG EKATEMPPQR KEMHMPPGGI EMPRQTKIDG SRLGKGTTPT  600
MNEEQGNSNE AMVRDPIAYN SRLGKDTIST SNKVIEQDPA ARNSQLGKGT TPTSNKVIER  660
DPAALNNRLG KGTTPTTNEG GNSSKAMERD PTARDSRVGK GTTTMNEKEG NSSKAMEQDP  720
TVRTYERGDG LKAKAVSPPT LVVNKRRKTR RWSVLEEDTL RSAVRELGKG YWKEILRNHS  780
DVFEGRTEVD LKDKWRNMTR RSGLLTMAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A199W1N30.0A0A199W1N3_ANACO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-08MYB_related family protein