PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016908.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 699aa    MW: 75826.9 Da    PI: 7.0216
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016908.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.82.8e-24194244152
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                  k+r++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQ 
  Aco016908.1 194 KARVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQA 244
                  68*******************.*****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.951191250IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-24191243IPR009057Homeodomain-like
SuperFamilySSF466891.38E-15192247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-22194247IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKSISSSSAM RVLPVERHPT CLQIAPRSSS SACKYHVTTT NQAVTALKLL AAENKDKFRR  60
SRHQLTSTFP DMLTGFQAPG ARRAGTWTCR HHGPADYLLE AAIRIEELQN IIGSTGQAER  120
SSTPVDADDD YERLQGANCA LGHCQVSDGS AELAGRSTRK RKDQIDEDDD DNNIDCENDN  180
AQENEDQDPS SQKKARVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV EKLTRENVAS  240
HLQACFSFRT PVLFLTHHFF FELLGKKFLK MKYRLYLKRL SAVASQQASM AAAFGVRDPS  300
YLHMGALDGF SNYQSLAPAS AHLPALTSFQ PSGLLNRTNP ARLGLPGLSP AGIVPVGCIQ  360
NNAISNPIDN LGNLSKFQCI TENQHGNLLQ GVPSTLELDQ LQQSKRVQEA NNGFPNGFSG  420
NGLASASCST PFINTTNNPL LSQSQTQLFQ SRGLGSHSSM GFPLINSESS QGTLRVASSN  480
LSFNHDNLSN IGNNFSTVSH IENNPISISA SSLLGGSPYD SMAGRNLQND SSFLGGNMIH  540
SHVTIDEKPK ILNFGAAGSF KQKTEELKQG LKNEANQVFS AFAGASQPTS HIIDPNPINR  600
LEKSNINGNT DMGLFGQASI SAPVLPPRYR IDNKPTTDGQ LNFKDEFLLG SSRLQGGFTS  660
NGCNFDDLVS SMIKPERDDL MFVDGDIGCD FYPLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-21190243154ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083199.10.0two-component response regulator ORR22-like, partial
TrEMBLA0A199VEP30.0A0A199VEP3_ANACO; Two-component response regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-40response regulator 12