PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016930.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 293aa    MW: 32373.3 Da    PI: 8.4558
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.2e-29140198158
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                  ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed+++++ tYegeHnh
  Aco016930.1 140 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApTCPVKKKVQRSAEDKSILVATYEGEHNH 198
                  58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28135199IPR003657WRKY domain
PROSITE profilePS5081124.937135198IPR003657WRKY domain
SuperFamilySSF1182906.28E-25138200IPR003657WRKY domain
SMARTSM007743.0E-33140200IPR003657WRKY domain
PfamPF031062.3E-24141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESAWFDDPS LSLDLTVGPL PSPDRATAEN LEDRLNKMNE ENKRLTKMLD AMYASYTDLH  60
SRFFSLASLS PSPREASPGR KRKIDGLNVI VVDDKPNGRA SELIESSPSD DSCKRWREEP  120
KSKVTKVYVR TDPADSSLMV KDGYQWRKYG QKVTRDNPSP RAYFRCSFAP TCPVKKKVQR  180
SAEDKSILVA TYEGEHNHGH RSPGEAANGS GKNGAPYPCS VAISPSGPMI TLDLTRQGPW  240
PDVARACREM ESPDFRRTLV DQMASSLVKD ANFTAALATA ISGRIFQHST TD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-201391981371WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020110063.10.0WRKY transcription factor WRKY76-like
SwissprotQ6IEK56e-79WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A199W8Q00.0A0A199W8Q0_ANACO; Putative WRKY transcription factor 40
STRINGXP_008799651.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-69WRKY DNA-binding protein 40