PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017080.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 271aa MW: 29527.5 Da PI: 7.8918

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.4	9.1e-30	41	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsek......AtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+e+ AtPkti+++m+vkgLtl h+kSHLQkYRl Aco017080.1 41 KPRLRWTADLHERFVDAVAQLGGPENvvyfaeATPKTIMRTMGVKGLTLFHLKSHLQKYRL 101 79********************855555559*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-29	38	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-14	41	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-20	41	102	IPR006447	Myb domain, plants
Pfam	PF00249	8.2E-8	43	100	IPR001005	SANT/Myb domain
Pfam	PF14379	2.0E-21	145	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MFSGLIHREA SISSGEDAAA AAAGAGAAHG GPSLVLTADP KPRLRWTADL HERFVDAVAQ 60 LGGPENVVYF AEATPKTIMR TMGVKGLTLF HLKSHLQKYR LGKQSGKEMT EQSKDAAYLS 120 EAQSSANLSP RVATPDVNEY ELGQEVKEAL RAQMEVQRKL HEQVEVQKHV QIRMEAYKKY 180 IDSLLDKAYK IASEQIAMSS LNNSTEHDLH DLATRGVMCA PSDPLSPSIF HQLSVGSISL 240 HSPGGRTAPT SAIDGQFFFQ KPPELKRKSY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-16	41	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-16	41	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-16	41	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-16	41	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069336	3e-33	AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence.
GenBank	AP004011	3e-33	AP004011.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1381_H04.
GenBank	AP014965	3e-33	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103030.1	1e-177	protein PHR1-LIKE 2-like
Swissprot	Q94A57	9e-67	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A199UVQ6	0.0	A0A199UVQ6_ANACO; Myb family transcription factor APL
STRING	XP_008794716.1	1e-135	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-68	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco017080.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]