PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017233.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 378aa    MW: 42250.7 Da    PI: 6.7115
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017233.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox215.8e-0717751056
                 HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
     Homeobox 10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                 +++ e+e+  e+  n  p ++ +  LA+k            ++ +qV +WFqNrR+ ++
  Aco017233.1 17 NEVVEMEARLEEvnNAIPARHVICALAEKFsasperagkiAVQPKQVWNWFQNRRYAQR 75
                 55566666666444677777777788888777778777779**************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-91278IPR009057Homeodomain-like
PROSITE profilePS500719.4911377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-51481IPR009057Homeodomain-like
PfamPF000462.1E-41875IPR001356Homeobox domain
PfamPF167194.7E-42118245IPR032001SAWADEE domain
CDDcd000240.00458132165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGRPPHGGGP VFRFTFNEVV EMEARLEEVN NAIPARHVIC ALAEKFSASP ERAGKIAVQP  60
KQVWNWFQNR RYAQRAKSTK ASAKLTVSPM AQDDLPSIRN VVPPVPVPTG RNSLENGQME  120
FEAKSARDGA WYDVQAFLSH RMFEIGDPEV RVRFQGFGME EDEWVNVRRC VRQRSLPCEA  180
AECVAVLQGD LILCFQEGKE QALYFDAHVL DAQRRRHDLR GCRCRFLVRY DHDQSEEIVP  240
LRKVCRRPET DYRLQILQAS RGASGAMDQR AMVKAPTSIP KDINPIVTNR TNLKQQKLMD  300
VNTDEVLTVL PAAVPNTDTN TKEEPTIGGD QFAYTSPIPP HTVSHSNSTI PDVTMGDAVP  360
PGNSTNSDYP QEGNVEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461162491134SHH1 SAWADEE
4iur_B2e-461162491134SHH1 SAWADEE
4iut_A2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461162491134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084356.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-134SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A199VI480.0A0A199VI48_ANACO; Protein SAWADEE HOMEODOMAIN
STRINGXP_008805937.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-124sequence-specific DNA binding transcription factors;sequence-specific DNA binding