PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017311.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Protein Properties

Length: 101aa MW: 11623.4 Da PI: 4.89

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017311.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.5	2.8e-14	2	76	17	97
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 v+pk+f e + +++++ lt + ++++Wev+++ +++ +r +++GWk+F+ +n+L+ gD +vF+l+++++ ++ v+v+ Aco017311.1 2 VVPKEFR-E--LLPPSPVWLT-LSCKNKTWEVRYCGDRYLKR--FETGWKRFAIENNLEIGDGCVFELMDNENLNFGVRVL 76 5666664.2..2234555555.34588*****88888888..89********************9988887777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	22	No hit	No description
Pfam	PF02362	9.2E-12	1	75	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.8E-14	1	74	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.296	1	79	IPR003340	B3 DNA binding domain
CDD	cd10017	4.21E-14	1	77	No hit	No description
SuperFamily	SSF101936	1.92E-14	1	77	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MVVPKEFREL LPPSPVWLTL SCKNKTWEVR YCGDRYLKRF ETGWKRFAIE NNLEIGDGCV 60 FELMDNENLN FGVRVLKGEI PSLVRNIEDG RSSDSPIMID *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020084987.1	2e-68	B3 domain-containing protein Os04g0386900-like
Refseq	XP_020085306.1	3e-68	B3 domain-containing protein Os04g0386900-like
Refseq	XP_020085307.1	3e-68	B3 domain-containing protein Os04g0386900-like
TrEMBL	A0A199V054	7e-67	A0A199V054_ANACO; B3 domain-containing protein
STRING	XP_008776698.1	1e-37	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-07	B3 family protein

Link Out ? help Back to Top
Phytozome	Aco017311.1