PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017509.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 347aa    MW: 37890.5 Da    PI: 10.0741
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017509.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.2e-1270114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  ++  q++s+ qky
      Aco017509.1  70 RESWTEPEHDKFLEALQLFDRD-WKKIGAFIG-SKSVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.76E-1564120IPR009057Homeodomain-like
PROSITE profilePS5129413.43765119IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1668117IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-568120IPR009057Homeodomain-like
SMARTSM007177.7E-1069117IPR001005SANT/Myb domain
PfamPF002491.0E-970114IPR001005SANT/Myb domain
CDDcd001671.47E-772115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGGGVSFFSG GHLKQKQRDQ HQHPEPILHP IPPPVALPIV SSPSSSSAMD ASADDPSKKI  60
RKPYTITKSR ESWTEPEHDK FLEALQLFDR DWKKIGAFIG SKSVIQIRSH AQKYFLKVQK  120
NGTSEHLPPP RPKRKASHPY PQKASKNAPQ ISQTTVPPRA AVLSSDSSSI VRNSNTNIPA  180
SSCANTSVQP ASATHVAKGD TGNIVANNYS SSNESPSRTC PTSETTSDQD NQDRSHRVMP  240
DFAEVYNFLG SMFDPTASGH FQKLKDMDPI DVETVLLLMR NLSVNLTSPD FEAHRHLLSK  300
YGVDSEEAKS SSTDNPLQAG LKVNKRRPGL HGPKQTLIKS VTRMAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320326LKVNKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020113089.10.0protein REVEILLE 6-like
SwissprotQ8H0W32e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A199VF741e-173A0A199VF74_ANACO; Protein REVEILLE 6 (Fragment)
STRINGXP_008796928.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.14e-97MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]