PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017701.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 572aa    MW: 62855.2 Da    PI: 8.5351
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017701.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23159260199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k ltpsd+++ g +++p+ +a+++       + ++ +   l+++d +g +We+++iyr++++r++lt+GW+ Fv+a++L +gD+vvF   +++ +e
  Aco017701.1 159 FAKMLTPSDANNGGGFSVPRYCADSIfprldmsKDPPVQ--YLSIRDVHGGRWEFRHIYRGTPRRHLLTTGWSIFVNAKKLVAGDVVVFA--RNEAKE 252
                  8899**************************975445445..7************************************************..569999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Aco017701.1 253 LFVGIRRA 260
                  9****996 PP
2Auxin_resp74.92.3e-25305388183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a+ + +Fev+Y+P+a+++eFvv+ e v ++l v++s+G R++m +etedss+ ++ +Gtv  + + d    ++S+Wr+Lk
  Aco017701.1 305 AVRLAKLGRPFEVMYYPKAGAAEFVVPKEVVDASLMVNWSAGIRVRMPVETEDSSRMTWfQGTVEEIMAKDMGPGTQSPWRMLK 388
                  567889999*************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-30156270IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-19158259No hitNo description
Gene3DG3DSA:2.40.330.103.2E-34158263IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-19159261IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717159261IPR003340B3 DNA binding domain
PfamPF023625.1E-21159260IPR003340B3 DNA binding domain
PfamPF065071.8E-22305388IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
IYHYPTLGFE NTNPRVPFPL LLRLRRVGSS DLVGNLAIVA PPMAAPAGPA AGEPRSVDPQ  60
LWMACAGAAA RVPAVGRDVY YVPEGHCEQC PRAPDLGGVG YDALVLCRVV GVRYLANPHT  120
DEVFAVIALE PGRLLPPRSA PGGGSAAGGG GGGGRVVSFA KMLTPSDANN GGGFSVPRYC  180
ADSIFPRLDM SKDPPVQYLS IRDVHGGRWE FRHIYRGTPR RHLLTTGWSI FVNAKKLVAG  240
DVVVFARNEA KELFVGIRRA YRSFPKPSPA TFPHREIEDE PEPENVEGFS RCVKGRVPPS  300
TVVEAVRLAK LGRPFEVMYY PKAGAAEFVV PKEVVDASLM VNWSAGIRVR MPVETEDSSR  360
MTWFQGTVEE IMAKDMGPGT QSPWRMLKID WDEKEALKDV KKNVKHVSPW DVELVIDAPQ  420
MQAPFPPLKK LKMLGQESPE FFGNKDGNMV SLLGLKNQNR GVLFTPLLNY TTSPAGMQGA  480
RHDLIFLPGL STPSSITLKD SSPQNQGSIL DSKAEPFKAP ASGPREDNEE QVEFSFRLFG  540
QLLKSMKLSN RVDLQLAQMW IADVDWLKVW DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-626041322353Auxin response factor 1
4ldy_B2e-626041322353Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020089297.10.0auxin response factor 17-like
TrEMBLA0A199W3W40.0A0A199W3W4_ANACO; Auxin response factor
STRINGXP_008793917.11e-163(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2255223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-108auxin response factor 17