PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017761.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 774aa MW: 85255.5 Da PI: 8.3778

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017761.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.2	6.5e-29	132	221	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA++vGF++r+s+ ++s+r+++i++r++vCskeg+re + ++ +e+++r+ra tr+gCka+++vkk + gkw+vtk+++eHnH Aco017761.1 132 FYSAYARHVGFRIRISRYTRSRRDNSIISRRLVCSKEGFREVRAHEgflKEQRHRHRAITRVGCKAMIMVKKFEPGKWVVTKFVKEHNHG 221 9*****************************************999999***************************************5 PP
2	FAR1	89.7	4.1e-28	269	362	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+sk +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka++ vkk ++gkw+vtk+e+eHnH+l Aco017761.1 269 FYINYARSTGFRARISKYCRSRRDNSIISRQIVCSKEGFREMRVKKeisadEGKAKRPRMITRIGCKAMIIVKKVNSGKWVVTKFEKEHNHDLL 362 9*****************************************999999999999************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-25	132	221	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.4E-26	269	362	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
SLHHSPPWIE AQNLSFHGRC GRRIIAHQAR VSRLSIFDHG LGRFLAPKRG ASYVSIEWMS 60 EMEGELISTT SEAKADIESE DAKTEVSMVS IDIEPSSAHD LDRGKLVASQ SDIDMEPCEG 120 MEFESEEAAR AFYSAYARHV GFRIRISRYT RSRRDNSIIS RRLVCSKEGF REVRAHEGFL 180 KEQRHRHRAI TRVGCKAMIM VKKFEPGKWV VTKFVKEHNH GPVPPRKAEI TSVRPDHDLI 240 GKPYLIGGDT LQEPFEGMEF DSEDAAKLFY INYARSTGFR ARISKYCRSR RDNSIISRQI 300 VCSKEGFREM RVKKEISADE GKAKRPRMIT RIGCKAMIIV KKVNSGKWVV TKFEKEHNHD 360 LLTTKKVPYG QLDIGSGKEL FNSLDDNLGP NGVKIEGECY YGTQGGASRE SLTVLYNQLC 420 HEAIKYAQEG SVTEEIYNVA MSALKEAVEK VSAAKRGILR KHTFIVSHRS NFTNTTQGKS 480 LNEVQCSNEV QLANTEQQLK LLQQQPVSLV LIPSNFLGNS GSSNCSTKGS VMLSVPSNGG 540 QGGDRPEDLD LPTENKREVQ STDKDMHVNG SGSSQNSQEV GDGQISIIQC SDRSISGPSK 600 ANMVAVPALP VTLYMPVMGS LPTACAAATP GRSYTLVATP VEALPLSSCP AEQPVSQSQN 660 LAPSGHSDQY RGPNPLVHAT AIACGARVVP PKAAASLIRA IEAKIKAKGV TVTKSSPHPL 720 EENQREHEQS ITKSEPLPEE MELHSVGRNT TENENSAEDL SVFEKHSRGF IGV*

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

SLHHSPPWIE AQNLSFHGRC GRRIIAHQAR VSRLSIFDHG LGRFLAPKRG ASYVSIEWMS  60
EMEGELISTT SEAKADIESE DAKTEVSMVS IDIEPSSAHD LDRGKLVASQ SDIDMEPCEG  120
MEFESEEAAR AFYSAYARHV GFRIRISRYT RSRRDNSIIS RRLVCSKEGF REVRAHEGFL  180
KEQRHRHRAI TRVGCKAMIM VKKFEPGKWV VTKFVKEHNH GPVPPRKAEI TSVRPDHDLI  240
GKPYLIGGDT LQEPFEGMEF DSEDAAKLFY INYARSTGFR ARISKYCRSR RDNSIISRQI  300
VCSKEGFREM RVKKEISADE GKAKRPRMIT RIGCKAMIIV KKVNSGKWVV TKFEKEHNHD  360
LLTTKKVPYG QLDIGSGKEL FNSLDDNLGP NGVKIEGECY YGTQGGASRE SLTVLYNQLC  420
HEAIKYAQEG SVTEEIYNVA MSALKEAVEK VSAAKRGILR KHTFIVSHRS NFTNTTQGKS  480
LNEVQCSNEV QLANTEQQLK LLQQQPVSLV LIPSNFLGNS GSSNCSTKGS VMLSVPSNGG  540
QGGDRPEDLD LPTENKREVQ STDKDMHVNG SGSSQNSQEV GDGQISIIQC SDRSISGPSK  600
ANMVAVPALP VTLYMPVMGS LPTACAAATP GRSYTLVATP VEALPLSSCP AEQPVSQSQN  660
LAPSGHSDQY RGPNPLVHAT AIACGARVVP PKAAASLIRA IEAKIKAKGV TVTKSSPHPL  720
EENQREHEQS ITKSEPLPEE MELHSVGRNT TENENSAEDL SVFEKHSRGF IGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088251.1	0.0	uncharacterized protein LOC109710184 isoform X1
Refseq	XP_020088252.1	0.0	uncharacterized protein LOC109710184 isoform X1
TrEMBL	A0A199VC31	0.0	A0A199VC31_ANACO; Protein FAR1-RELATED SEQUENCE 7
STRING	XP_008805726.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-32	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Aco017761.1