PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017970.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 147aa MW: 16328.9 Da PI: 11.8105

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	46.1	1.1e-14	76	106	2	32
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryf 32 ++ alkcp+Cdstntk Cy+nnyslsqPry+ Aco017970.1 76 PDPALKCPQCDSTNTKSCYFNNYSLSQPRYL 106 67899************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-9	72	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.8E-12	79	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSWEGETPRE GARFLGRRDT LGRRRFTLEN KKIKGKKKKS KKKTPQKPSP RPPAPSLPIA 60 ACPPAALARL AKIPQPDPAL KCPQCDSTNT KSCYFNNYSL SQPRYLHPRG GPPLGGGHLR 120 PRRSRGPRCS RGQQQRPRRG EDLGNK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	38	RRRFTLENKKIKGKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009343295.1	2e-17	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A199V252	5e-98	A0A199V252_ANACO; Dof zinc finger protein DOF3.6
STRING	XP_009343295.1	9e-17	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	3e-11	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Aco017970.1