PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017998.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bZIP

Protein Properties

Length: 411aa MW: 44170.8 Da PI: 6.9499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017998.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	218	276	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK+ +i+eLe+kv++L++e ++L +l l+ l++e+ Aco017998.1 218 KRAKRIWANRQSAARSKERKLRYIAELERKVQALQTEATTLSAQLTLLQRDTTGLTAEN 276 9********************************************99998877777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.9E-16	214	278	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.703	216	279	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-10	218	272	No hit	No description
SuperFamily	SSF57959	1.2E-10	218	270	No hit	No description
Pfam	PF00170	3.6E-9	218	272	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.00E-23	219	268	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MMNKDKSPVQ GGGAGAHYAA YGSPSGGFAP MADPSPPSSS SSAHAGHDEA GRYSHDISRM 60 PDFPPRNRGH RRAQSEILSL PDDITFDSDL GFVGSHDGPS LSDENDDELF SMFIDVEKLN 120 FATSEGESSG NVVAPHLPTT TAAAASGAVA AWPSEAESSA AGSRERPRPR HQHSQSMDGS 180 TSIKPELLGS SGEGPLLPDA KKAMSAAKLA DLALVDPKRA KRIWANRQSA ARSKERKLRY 240 IAELERKVQA LQTEATTLSA QLTLLQRDTT GLTAENNELK LRLQTMEQQV HLQDALNDAL 300 RDEVQRLKHA TGQMPNGGAA AMMNFAPPHS FGTSQQFYHH NQAMQSILTA RQLQQLQIHS 360 QHQQPPPLQH PPQHLHLQDP LANPRMKGSS SSSSSSLSQR AEGKSDSNST *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MMNKDKSPVQ GGGAGAHYAA YGSPSGGFAP MADPSPPSSS SSAHAGHDEA GRYSHDISRM  60
PDFPPRNRGH RRAQSEILSL PDDITFDSDL GFVGSHDGPS LSDENDDELF SMFIDVEKLN  120
FATSEGESSG NVVAPHLPTT TAAAASGAVA AWPSEAESSA AGSRERPRPR HQHSQSMDGS  180
TSIKPELLGS SGEGPLLPDA KKAMSAAKLA DLALVDPKRA KRIWANRQSA ARSKERKLRY  240
IAELERKVQA LQTEATTLSA QLTLLQRDTT GLTAENNELK LRLQTMEQQV HLQDALNDAL  300
RDEVQRLKHA TGQMPNGGAA AMMNFAPPHS FGTSQQFYHH NQAMQSILTA RQLQQLQIHS  360
QHQQPPPLQH PPQHLHLQDP LANPRMKGSS SSSSSSLSQR AEGKSDSNST *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665383	0.0	KM665383.1 Ananas bracteatus clone 50514b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098158.1	0.0	transcription factor RF2a-like
Swissprot	Q04088	1e-121	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A199VUH6	0.0	A0A199VUH6_ANACO; Putative transcription factor PosF21 (Fragment)
STRING	GSMUA_Achr11P14990_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-103	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aco017998.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]