PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018023.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 174aa    MW: 19023.9 Da    PI: 6.1145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018023.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43e-171868155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ykGVr+++ +g+Wv+eIr+p +   r r +lg++ tae Aa a++aa   l+g
  Aco018023.1 18 KKYKGVRRRR-WGKWVSEIRVPGT---RHRLWLGSYATAEAAAVAHDAAVFFLRG 68
                 59*****777.**********943...5***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.83E-121880No hitNo description
SuperFamilySSF541714.38E-181978IPR016177DNA-binding domain
PROSITE profilePS5103221.8651978IPR001471AP2/ERF domain
SMARTSM003802.4E-281982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-261980IPR001471AP2/ERF domain
PfamPF008473.3E-101968IPR001471AP2/ERF domain
PRINTSPR003671.7E-82031IPR001471AP2/ERF domain
PRINTSPR003671.7E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSRAMAADGD GDGDCERKKY KGVRRRRWGK WVSEIRVPGT RHRLWLGSYA TAEAAAVAHD  60
AAVFFLRGPD AAEGFNFPES AEGCYWRRAT SAGGQLSPQS VQRVASDAGM AADAGLAVGR  120
AEERELQQQQ QHQHQQEQNQ QQQLVQQPAV LTGEYWGPAG GDEWWSDYGV GGF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248369e-39AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376239e-39AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149619e-39AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126139e-39CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102470.11e-123ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I83e-36ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A199W1R93e-78A0A199W1R9_ANACO; Ethylene-responsive transcription factor ERF020
STRINGXP_008807007.14e-40(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-28ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]