PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018025.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 134aa    MW: 14047.6 Da    PI: 10.8325
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018025.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-0720432247
                     T-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
                     + W+tIar +  gRt++ + ++w++ 
      Aco018025.1 20 K-WATIARLLS-GRTGNAINNHWNST 43
                     4.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-91947IPR009057Homeodomain-like
CDDcd001670.002182044No hitNo description
SuperFamilySSF466895.22E-62048IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAPGSFPRFD RVKISLLLSK WATIARLLSG RTGNAINNHW NSTLKRKYVP PAAAGIDSAA  60
AAPDFGDDEA PPPRLPKRAS XAGLCLSPDS PSGSDLSDST HHTHPFAASS LRKAAAAHVY  120
RPLPRTPAPQ SPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594183e-32KF059418.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) mRNA, complete cds.
GenBankKF0595283e-32KF059528.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107305.14e-81transcription factor MYB44-like
TrEMBLA0A199VPN29e-34A0A199VPN2_ANACO; Transcription factor MYB44
STRINGTraes_5BL_486D0D865.11e-21(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-11myb domain protein 77