PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018062.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 275aa    MW: 30215.9 Da    PI: 9.5521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018062.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.74.1e-31271691128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tks 80 
                  lp+G++F+Ptd+el+ e+L++k++  +      +   +    +i+   +i++++P++Lp  v+ +    +fF++ +++y+tg+rk+r+         +
  Aco018062.1  27 LPAGVKFDPTDQELL-EHLEAKARPGSrklhplI---DdyipTIEGDdGICYTHPERLP-GVSRDGLIRHFFHRPSRAYTTGTRKRRKvhtadpqCGE 119
                  799************.99****998885554331...133333555535**********.555555677******************74555554448 PP

          NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                   +W++tgk+++v+  +g+l g kk+Lv+y   g+++k+ekt+Wv h+y+l
  Aco018062.1 120 TRWHKTGKTRPVFGPEGNLLGYKKILVLYtsYGKQKKPEKTNWVTHQYHL 169
                  89***************************6668999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3519188IPR003441NAC domain
PROSITE profilePS5100532.6527188IPR003441NAC domain
PfamPF023651.4E-1328169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRITCRLGIQ RAKHNTNRKP VQTAAGLPAG VKFDPTDQEL LEHLEAKARP GSRKLHPLID  60
DYIPTIEGDD GICYTHPERL PGVSRDGLIR HFFHRPSRAY TTGTRKRRKV HTADPQCGET  120
RWHKTGKTRP VFGPEGNLLG YKKILVLYTS YGKQKKPEKT NWVTHQYHLG ADDEEKDGEL  180
VVSKVFYQTQ PRQCGGVRED AVRSSFKGQS SSSVDIEGDE VAYKEGHVAE FYGTGLLGYN  240
QGGNGNGGSN SSKASSAHVI ASFALHACGP SFIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-12211699140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098273.10.0NAC domain-containing protein 73-like
SwissprotO494595e-95NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A199W9241e-135A0A199W924_ANACO; NAC domain-containing protein 73 (Fragment)
STRINGXP_008789978.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.16e-97NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]