PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco018092.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 214aa MW: 22623.1 Da PI: 8.8485

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco018092.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	69.5	5.1e-22	87	128	5	45
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrry.WtkGGa 45 l+cprC s++tkfCy+nny+++qPr+fCk+Cr+ t+GGa Aco018092.1 87 PLPCPRCRSRETKFCYFNNYNVNQPRHFCKSCRQLtGTAGGA 128 679*****************************9962578886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.4E-18	87	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	18.017	88	139	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-13	88	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGPGEAAAAA AAAAAAAAAP VIKLFGAVIH DRPPKEEEED DDDDAASASA AAAAAAARPP 60 PPSSSAESGG GGGGGGGGAA AAGVSAPLPC PRCRSRETKF CYFNNYNVNQ PRHFCKSCRQ 120 LTGTAGGAPA TSRRRRPPQG PSPPHPSPDR CFPRPIAPRF RRPPLRLTKI HDEDEDEDDH 180 HHHHHHHQQR LAIDYHFKES VHHPPKKRKK EKT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	210	PKKRKKE
2	205	209	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ969263	9e-55	AJ969263.1 Hordeum vulgare dof17 gene for dof zinc finger protein 17, cultivated variety Bomi.
GenBank	AK360617	9e-55	AK360617.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1121P17.
GenBank	AK365055	9e-55	AK365055.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030J14.
GenBank	HG670306	9e-55	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098489.1	1e-151	dof zinc finger protein DOF3.7-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	1e-17	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco018092.1