PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018256.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Dof
Protein Properties Length: 260aa    MW: 28247.6 Da    PI: 4.6141
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018256.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.38.1e-393189361
       zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                 ++a +cprCds+ntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rkn++ 
  Aco018256.1 31 DQAPNCPRCDSANTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRP 89
                 67889***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-292288IPR003851Zinc finger, Dof-type
PfamPF027017.2E-333288IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9663488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLSSRESMLP YPSPWPMPPL AADRRWKPNV DQAPNCPRCD SANTKFCYYN NYSLSQPRYF  60
CKACRRYWTK GGSLRNVPVG GGCRKNRRPK PKVSNAAGPR SFVRPDLALD SAVPADQPSV  120
ATDVSAYDAG NGSSIDLASL YAKFLNQCPA ENPAAGAEER FDAFSGSSQT QIQVQMPSLQ  180
DVFMVTEAEA EAEAEAEAVQ CSVTGHEVSC FSSTDPVMSC CYEPLSLPIE GVNNFLTVNP  240
TFGLQPFESF PELESNGIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490KNRRPKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763885e-60AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843605e-60AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087456.10.0dof zinc finger protein DOF5.3-like
SwissprotQ9SVC52e-38DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A199UL551e-171A0A199UL55_ANACO; Dof zinc finger protein DOF3.5
STRINGXP_008779883.11e-63(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.12e-40Dof family protein