PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018342.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 202aa    MW: 22926 Da    PI: 10.1046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018342.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.2e-1814901698
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 l++pkkf+++++g+   s  + l++++g+ W++ +  +k+++ ++l++GW eF  a++++e+D + F+ +g+s+f   v +++
  Aco018342.1 14 LSIPKKFVDNFNGQ--ISNVVDLKTPRGNIWTIGV--TKSQDNIFLQSGWTEFIAAHRIEENDLLFFTCKGNSSF--EVAIYD 90
                 89******998888..7889***************..*******************************9999999..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.4E-6692IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-191394IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-191397IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-151489IPR003340B3 DNA binding domain
PROSITE profilePS5086313.2671492IPR003340B3 DNA binding domain
CDDcd100173.71E-161490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MWRKRYVRQW ELLLSIPKKF VDNFNGQISN VVDLKTPRGN IWTIGVTKSQ DNIFLQSGWT  60
EFIAAHRIEE NDLLFFTCKG NSSFEVAIYD ESGCEKASPF FVKKNARKTR EGDGAIPAET  120
RNEGNRRRKV INLCSSGSFS ENDVEQKISR KSLRANNKTE ALPEEPVGTG YGIFDNDLAY  180
YVRSNLKPRR RAALALAVNV R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092052.14e-79B3 domain-containing protein Os03g0620400
TrEMBLA0A199VWZ99e-78A0A199VWZ9_ANACO; B3 domain-containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.19e-17B3 family protein