PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco018366.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 785aa MW: 87823.5 Da PI: 7.5783

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco018366.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.2e-28	532	582	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l++yF++++kdAAk+Lgvc+T+LKriCRqyGI+RWP Rkik++ Aco018366.1 532 EKTVSLQILQQYFAGSLKDAAKSLGVCPTTLKRICRQYGINRWPARKIKKV 582 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.95	521	602	IPR003035	RWP-RK domain
Pfam	PF02042	8.0E-25	534	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.33E-20	689	779	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.3E-22	696	778	No hit	No description
SMART	SM00666	2.8E-14	699	782	IPR000270	PB1 domain
PROSITE profile	PS51745	17.797	699	777	IPR000270	PB1 domain
Pfam	PF00564	5.9E-15	700	776	IPR000270	PB1 domain
CDD	cd06407	2.55E-32	700	778	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MEDDSQPVDL DMLDQILSKD NCNWFETPNS SSFSPLLASS SSVCSEITTQ RSIISTNLRI 60 ENTNGTQFLD SNAIQRVFSV QSSELHDSRT SWGSSLNERL MHALSYFKET QIDPNVLVQL 120 WVPEKRGNQL VLSTREQPYF LDPNCEKLVN YREISANYQF SAEVDCEGAL GLPGRVFLGK 180 LPEWTPDVRL FTPYEYPRVN YARCLDVRGS VAIPVFERGN CSCLGVVEVV MITQKMNYDS 240 ELNSICSALQ AVNLRSSEVQ CVPQIKLNVS CYQAAIPEIL EVLRSLCKAH NLPLAQTWIP 300 CVQQGKRGSR HSDENYARCV STVDSACYVN DPSLFSFHKA CSEHHLLRGQ GIVGRAFNIN 360 QPSFSSDVSA LSKFEYPLSH HARMFNLKGA VAIRLRSTLT GSTDFVLEFF LPSYCIGTNE 420 QKLMLESLSS TVQNVCRTLR VVTNKENEDE ASLEIRELNS LVVSHSKSLC DGGQEQNKHN 480 FLVKSSQKHK GEGECSKGKV LLESDQKQED LVKDDEKCSV GKTTEKRYSK NEKTVSLQIL 540 QQYFAGSLKD AAKSLGVCPT TLKRICRQYG INRWPARKIK KVNHSLKKLQ VVIDSVHGAD 600 NALQLPSLYK DIATASCFED NTQGNNIVHP VSEKDKHSFY VSSSSLFPST CNLSPNSSRM 660 EIASKEKDRG SAHGENSTRE APKCFSGSSS SLLRKEEKCV RVKVVCGSEK VRFRLKPPWR 720 FQDLKQEIVR RCNIANNVSL NLKYMDDDSE WILLTCDADL EECIHVCNAA NAHRVKISAS 780 LGST*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MEDDSQPVDL DMLDQILSKD NCNWFETPNS SSFSPLLASS SSVCSEITTQ RSIISTNLRI  60
ENTNGTQFLD SNAIQRVFSV QSSELHDSRT SWGSSLNERL MHALSYFKET QIDPNVLVQL  120
WVPEKRGNQL VLSTREQPYF LDPNCEKLVN YREISANYQF SAEVDCEGAL GLPGRVFLGK  180
LPEWTPDVRL FTPYEYPRVN YARCLDVRGS VAIPVFERGN CSCLGVVEVV MITQKMNYDS  240
ELNSICSALQ AVNLRSSEVQ CVPQIKLNVS CYQAAIPEIL EVLRSLCKAH NLPLAQTWIP  300
CVQQGKRGSR HSDENYARCV STVDSACYVN DPSLFSFHKA CSEHHLLRGQ GIVGRAFNIN  360
QPSFSSDVSA LSKFEYPLSH HARMFNLKGA VAIRLRSTLT GSTDFVLEFF LPSYCIGTNE  420
QKLMLESLSS TVQNVCRTLR VVTNKENEDE ASLEIRELNS LVVSHSKSLC DGGQEQNKHN  480
FLVKSSQKHK GEGECSKGKV LLESDQKQED LVKDDEKCSV GKTTEKRYSK NEKTVSLQIL  540
QQYFAGSLKD AAKSLGVCPT TLKRICRQYG INRWPARKIK KVNHSLKKLQ VVIDSVHGAD  600
NALQLPSLYK DIATASCFED NTQGNNIVHP VSEKDKHSFY VSSSSLFPST CNLSPNSSRM  660
EIASKEKDRG SAHGENSTRE APKCFSGSSS SLLRKEEKCV RVKVVCGSEK VRFRLKPPWR  720
FQDLKQEIVR RCNIANNVSL NLKYMDDDSE WILLTCDADL EECIHVCNAA NAHRVKISAS  780
LGST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092946.1	0.0	protein NLP1-like
TrEMBL	A0A199VG88	0.0	A0A199VG88_ANACO; Protein NLP1
STRING	OPUNC09G17100.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aco018366.1